NUMERICAL METHODS LABORATORY: Refereed Contributions

• PUB-06-1: Resolution Issues in Numerical Models of Oceanic and Coastal Circulation
  D.A. Greenberg, F. Dupont, F.H.Lyard, D.R. Lynch, F.E. Werner
  Submitted, Cont. Shelf Resch
  1 February 2006

• PUB-05-4: Lecture Notes in Natural Resource Management
  Daniel R. Lynch
  Draft June 2005.

• PUB-05-3: Initial observations of the 2005 Alexandrium fundyense bloom in southern New England: General patterns and mechanisms.
  D. Anderson, et al.
  August 2005
  Ecology and Oceanography of Harmful Algal Blooms in the Gulf of Maine
  Deep-Sea Research II, Anderson et al, eds.
  In press, 2005.

• PUB-05-2: Assimilating intraoperative data with brain shift modeling using the adjoint equations.
  K. Lunn, K. Paulsen, D. Lynch, D. Roberts, F. Kennedy, A. Hartov
  January 2005
  Medical Image Analysis 9:281-293 (2005).

• PUB-05-1: Data-assimilative hindcast on the southern flank of Georges Bank during May 1999: frontal circulation and implications.
  A. Aretxabaleta, J. Manning, F. Werner, K. Smith, B. Blanton, D. Lynch
  27 August 2004
  Recent Developments in Physical Oceanographic Modeling: Part II.
  A.M. Davies and D.R. Lynch, Guest Eds.
  Special Issue, Continental Shelf Research 25, 2005.
  

• PUB-04-9: Mechanisms regulating the large-scale seasonal fluctuations in Alexamdrium fundyense in the Gulf of Maine: results from a physical-biological model
  D.J. McGillicuddy, D.M. Anderson, D.R. Lynch, D.W. Townsend
  December 22, 2004
  Ecology and Oceanography of Harmful Algal Blooms in the Gulf of Maine
  Deep-Sea Research II(52):2968-2714 Anderson et al, eds.
  2005.
  

• PUB-04-8: Barotropic Tides in the South Atlantic Bight
  B.O. Blanton, F.E. Werner, H.E. Seim, R.A. Luettich, D.R. Lynch, K.W. Smith, G. Voulgaris, F.M. Bingham, F. Way
  J. Geophys. Res. 109:C12024
  2004.

• PUB-04-7: BATTRI: A Two-Dimensional Bathymetry-Based Unstructured Triangular Grid Generator for Finite Element Circulation Modeling
  A. Bilgili, K. Smith, D. Lynch
  Computers and Geosciences 32: 632-642, June 2006
  Submitted Nov. 12, 2004.

• PUB-04-6: A System for Visualizing Time Varying Oceanographic 3D Data.
  R. Arsenault, C. Ware, M. Plumlee, S. Martin, L Whitcomb, D. Wiley, T. Gross, A. Bilgili
  Proc. IEEE OCEANS '04
  Nov. 2004.

• PUB-04-5: Data Assimilative Hindcast for the Gulf of Maine Coastal Circulation.
  R. He, D.J. McGillicuddy Jr., D. Lynch, K. Smith, C. Stock, J. Manning
  J. Geophysical Research, in press 2005.
  

• PUB-04-4: A Data Assimilative Approach to Coastal Water Level Forecasting
  B.O. Blanton, D.R. Lynch, K.W. Smith, R.A. Luettich
  AMS, 2004.

• PUB-04-3: Estuary/Ocean Exchange and Tidal Mixing in a Gulf of Maine Estuary: A Lagrangian Modeling Study
  A. Bilgili, J. Proehl, D. Lynch, K. Smith, M.R. Swift
  Accepted: Estuarine, Coastal and Shelf Science, April 22, 2005.

• PUB-04-2: Estimation of Residence Time in a Shallow Back Barrier Lagoon, Hog Island Bay, Virginia, USA
  D.C. Fugate, C.T. Friedrichs, A. Bilgili
  Estuarine and Coastal Modeling, M.L. Spaulding, ed.
  Proc. of the Ninth International Conference, Charleston, SC October 2005. pp.319-337.
  ASCE, 2006.

• PUB-04-1: Wind-Based Convolution in Limited-Area Coastal Ocean Forecasting: inference and persistence
  D.R. Lynch and K. Smith
  Proc. Computational Methods in Water Resources, U. North Carolina-Chapel Hill, June 2004.

• PUB-03-3: Modeling blooms of Alexandrium fundyense in the Gulf of Maine
  D.J. McGillicuddy, D.M. Anderson, C.A. Stock, D.R. Lynch, D.W. Townsend
  UNESCO Monographs on Oceanographic Methodology (HABWATCH), Marcel Babin and Colin Roesler, eds. 2005.

• PUB-03-2: The Use of Lagrangian Particle Methods to Investigate Ocean-Estuary Exchange in Well-Mixed Estuaries
  J.A. Proehl, A. Bilgili, D. Lynch, K. Smith, M.R. Swift
  Proc. Computational Methods in Water Resources, U. North Carolina-Chapel Hill, June 2004.

• PUB-03-1: Seasonal Mean Circulation on the Irish Shelf -- A Model-Generated Climatology
  D. Lynch, K. Smith, B. Cahill
  Recent Developments in Physical Oceanographic Modeling: Part I.
  A.M. Davies and D.R. Lynch, Guest Eds.
  Special Issue, Continental Shelf Research 24(18), 2215-2244, 2004.

• PUB-02-3: Forecasting the Coastal Ocean: Resolution, Tide, and Operational Data in the South Atlantic Bight.
  D. Lynch, K. Smith, B. Blanton, R. Luettich, F. Werner
  Submitted, J. Atmos. Oceanic Tech. July 15, 2003; in press.

• PUB-02-2: Numerical Partial Differential Equations for Environmental Scientists and Engineers --
  A First Practical Course
  D.R. Lynch
  Springer, 2004

• PUB-02-1: Modeling Hydrodynamics and Bed-Load Transport of Coarse Sediments in the Great Bay Esutary, New Hampshire.
  A. Bilgili, M.R. Swift, D.R. Lynch, J.T.C. Ip
  Accepted, Estuarine, Coastal and Shelf Science, June 2003.

• PUB-01-6: Spatially-explicit individual based modeling of marine populations: a review of the advances in the 1990s.
  Francisco E. Werner, John A. Quinlan, R. Gregory Lough, Daniel R. Lynch
  Sarsia 86:411-421, 2001.

• PUB-01-5: DRAFT: Circulation Estimation from Drifter Data:
  An OA / Stochastic Differential Equation Approach
  Daniel R. Lynch, Dennis J. McGillicuddy, Jr.
  (in preparation; 9 Dec. 2001 Draft by drl.)

• PUB-01-4: Numerical Modeling of Tides in the Great Bay Estuarine System: Dynamical Balance and Spring-Neap Residual Modulation.
  J. McLaughlin, A. Bilgili, D.Lynch
  Submitted, Estuarine, Coastal and Shelf Science, 2001.
  

• PUB-01-3: Modeling Turbulent Dispersion on the North Flank of Georges Bank using Lagrangian Particle Methods
  J. Proehl, D.Lynch, D. McGillicuddy, J. Ledwell
  Accepted, May 2004.
  Recent Developments in Physical Oceanographic Modeling: Part II.
  A.M. Davies and D.R. Lynch, Guest Eds.
  Special Issue, Continental Shelf Research 25, 2005.

• PUB-01-2: Simulation of the Great Bay Estuarine System:
  Tides with Tidal Flats Wetting and Drying
  S.N. Erturk, A. Bilgili, M.R. Swift, W.S. Brown, B. Celikkol,
  J.T. Ip, D.R. Lynch
  February 2001.
  Submitted: J. Geophys. Resch.

• PUB-01-1: Hindcasting the Georges Bank Circulation, Part II: Wind-Band Inversion
  Daniel R. Lynch and Christopher E. Naimie
  11 January 2001.
  Revised 31 January 2001
  Submitted: Continental Shelf Research.

• PUB-00-3: Objective Analysis for Coastal Regimes.
  Daniel R. Lynch and Dennis J. McGillicuddy, Jr.
  2 February 2001
  To Appear: Continental Shelf Research.

• PUB-00-2: Inversion Skill for Limited-Area Shelf Modeling - Part I: An OSSE Case Study.
  Christopher E. Naimie and Daniel R. Lynch.
  21 February 2001.
  To appear: Continental Shelf Research.

• PUB-00-1: Seasonal Mean Circulation in the Yellow Sea - A Model-Generated Climatology.
  Christopher E. Naimie, Cheryl Ann Blain, and Daniel R. Lynch.
  Final: 20 June 2000.
  to appear: Continental Shelf Research 21, 667-695 (2001).

• PUB-99-4: Coupled Physical/Biological Models for the Coastal Ocean
  Daniel R. Lynch, Naval Research Reviews, 1999.

• PUB-99-3: Inverse Model for Limited-Area Hindcasts on the Continental Shelf.
  Daniel R. Lynch, Charles G. Hannah. 27 June 2000. Submitted, J. Atmos. Oceanic. Tech.

• PUB-99-2: Real-Time Data Assimilative Modeling on Georges Bank. Dec. 20, 2000. Oceanography, in press.

  Daniel R. Lynch, Christopher E. Naimie, Justin T. Ip, Craig V. Lewis;
  Francisco E. Werner, Richard Luettich, Brian O. Blanton, John Quinlan;
  Dennis J. McGillicuddy, Jr., James R. Ledwell, James Churchill, Valery Kosnyrev;
  Cabell S. Davis, Scott M. Gallager, Carin J. Ashjian;
  R. Gregory Lough, James Manning;
  Charles N. Flagg, Charles G. Hannah, Robert Groman

• PUB-99-1: Can Georges Bank Cod Survive on a Calanoid Diet? Daniel R. Lynch, Craig V. Lewis, Francisco E. Werner. Prepared for Deep Sea Research Special GLOBEC-Georges Bank Issue

• PUB-98-2: Coupling of an Individual-Based population dynamic model of Calanus finmarchicus to a circulation model for the Georges Bank region.
  C.B. Miller, D.R. Lynch, F. Carlotti, W.C. Gentleman, C.V.W. Lewis. Fisheries Oceanography 7:3/4, 219-234 (1998).

• PUB-98-1: An Adjoint Data Assimilation Approach to Diagnosis of Physical and Biological Controls on Pseudocalanus spp. in the Gulf of Maine-Georges Bank Region.
  D.J. McGillicuddy, D.R. Lynch, A.M. Moore, W.C. Gentleman, C.S. Davis, C.J. Meise. Fisheries Oceanography (in press 1998).

• PUB-97-5: Modeling Realistic Events of the Maine Coastal Current. Monica J. Holboke. Proc. ASCE Fifth International Conference on Estuarine and Coastal Modeling, Alexandria, VA. 22-24 October, 1997

• PUB-97-4: Biophysical Simulations of Calanus finmarchicus Population Dynamics in the Gulf of Maine. Daniel R. Lynch, Wendy C. Gentleman, Dennis McGillicuddy, Cabell S. Davis.

• PUB-97-3: Hydrographic Data Assimilation on Georges Bank. D.R. Lynch, and C.E. Naimie. Proc. ASCE 5th Int. Conf. on Estuarine and Coastal Modeling, Alexandria, VA October 22-24, 1997.

• PUB-97-2: Hindcasting the Georges Bank Circulation, Part I: Detiding. D.R. Lynch, C.E. Naimie, C.G. Hannah. To appear, Continental Shelf Research.

• PUB-97-1: Normal Flow Boundary Conditions in 3D Circulation Models, D.R. Lynch and M.J. Holboke, 13 Feb. 1997. To appear, Int. J. Num. Meths. Fluids.

• PUB-96-1: Simulation of Estuarine Flooding and Dewatering with Application to Great Bay, New Hampshire. J.T. Ip, D.R. Lynch and C.T. Friedrichs. Submitted to Estuarine Coastal & Shelf Science; September 25, 1996. In press 1998.

• PUB-95-2: Simulations of the Maine Coastal Current, Monica J.Holboke and Daniel R. Lynch. ASCE Conference on Estuarine and Coastal Modeling, San Diego, October 1995. (Postscript version here.)
  • Appendix: Animations of Time-Variable Wind Response

• PUB-95-1: The Maine Coastal Current Spring Climatological Circulation. Daniel R. Lynch, Monica J. Holboke, Christopher E. Naimie.
  Accepted 27 August, 1996, Continental Shelf Research.
  Published, Continental Shelf Research 17(6):605-634 (1997)

Last Modified: 15 July 2000(drl).

For information, contact Daniel R. Lynch .